Using different IC cards can be hard in Japan in the arcade shops and on the games but KONAMI started to working on a new multi electronic money service with SEGA.
In a nutshell they are working on a new system where you can play with all the available IC cards for the same service.

To minimize the costs of the new infrastructure, the service going to be a cloud based one and going to works on the currently running e-Amusement and services.
According to KONAMI you can test in some stores the service from 2016 Fall but the details comes later in October / November.